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ArrayExpress update--trends in database growth and links to data analysis tools.

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TitleArrayExpress update--trends in database growth and links to data analysis tools.
Publication TypeJournal Article
Year of Publication2012
AuthorsRustici, G., N. Kolesnikov, M. Brandizi, T. Burdett, M. Dylag, I. Emam, A. Farne, E. Hastings, J. Ison, M. Keays, N. Kurbatova, J. Malone, R. Mani, A. Mupo, R. Pedro Pereira, E. Pilicheva, J. Rung, A. Sharma, A. Y. Tang, T. Ternent, A. Tikhonov, D. Welter, E. Williams, A. Brazma, H. Parkinson, and U. Sarkans
JournalNucleic Acids Res
Date Published2012 Nov 27
ISSN1362-4962
Abstract

The ArrayExpress Archive of Functional Genomics Data (http://www.ebi.ac.uk/arrayexpress) is one of three international functional genomics public data repositories, alongside the Gene Expression Omnibus at NCBI and the DDBJ Omics Archive, supporting peer-reviewed publications. It accepts data generated by sequencing or array-based technologies and currently contains data from almost a million assays, from over 30 000 experiments. The proportion of sequencing-based submissions has grown significantly over the last 2 years and has reached, in 2012, 15% of all new data. All data are available from ArrayExpress in MAGE-TAB format, which allows robust linking to data analysis and visualization tools, including Bioconductor and GenomeSpace. Additionally, R objects, for microarray data, and binary alignment format files, for sequencing data, have been generated for a significant proportion of ArrayExpress data.

DOI10.1093/nar/gks1174
Alternate JournalNucleic Acids Res.
Full Text
PubMed ID23193272

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